PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096340.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 586aa    MW: 64233.1 Da    PI: 5.437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08228247525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C ffa+ G+C +G++C+F H
  XP_011096340.1 228 PCEFFAK-GWCIRGNSCRFLH 247
                     8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.76E-6223247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042223250IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6228247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MASVMPPPPP KPSTSGIDDG EDEIEYEEIE VEEEVEVEEE VGEELEGEDV EEGGEHEIEE  60
GLTPACDEKQ GTATVQMLEP AGHPKQKQSG SASQSISISN PPTGIPKIQT STGGLKISGS  120
SEKEELHVYG ERTSRDNDPK APFYQIGEVN RGRRSPFIGD VNTALTGDAS SQKDNAINSV  180
TTETNHRAAE PVAKIMQMSP RLHVPQIRLR DPSPSAEFDR DNKKLRIPCE FFAKGWCIRG  240
NSCRFLHIGD GSAVVKTTKG TYEGNFSGSS VASHDNHHNT RISAFGSTLQ EMIGKESDIE  300
HKGPRSTELS HSHSRPPLSF GSPSWNTSAL GTQNLLKSGV ERHASVSSSF KRSISSVSGS  360
ESERLSENHV FKDTDLAKYT SKISYDWEPS APFRPSHAIT RNLLLKKNLY NPIRDSIEHT  420
GVKDGQVKLS SSDQGSNKNV DVPSNSSREE KLLNSVHIEG TVKDNIFLLS SDNKLNDNTR  480
DKAELKVDGS DNNNEADVDL KGADQLQSES KAFKYFQSAL IEFVKELVKP TWREGLMSKD  540
AHKLIVKKAV DKVLSTLQPN QIPSTGESVN LYLSSSKPKL AKLVEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553962.10.0protein FRIGIDA-ESSENTIAL 1 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-18C3H family protein