PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096339.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 671aa MW: 73977.2 Da PI: 6.1079

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.4e-08	228	247	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ffa+ G+C +G++C+F H XP_011096339.1 228 PCEFFAK-GWCIRGNSCRFLH 247 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.8E-6	223	247	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.042	223	250	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-6	228	247	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MASVMPPPPP KPSTSGIDDG EDEIEYEEIE VEEEVEVEEE VGEELEGEDV EEGGEHEIEE 60 GLTPACDEKQ GTATVQMLEP AGHPKQKQSG SASQSISISN PPTGIPKIQT STGGLKISGS 120 SEKEELHVYG ERTSRDNDPK APFYQIGEVN RGRRSPFIGD VNTALTGDAS SQKDNAINSV 180 TTETNHRAAE PVAKIMQMSP RLHVPQIRLR DPSPSAEFDR DNKKLRIPCE FFAKGWCIRG 240 NSCRFLHIGD GSAVVKTTKG TYEGNFSGSS VASHDNHHNT RISAFGSTLQ EMIGKESDIE 300 HKGPRSTELS HSHSRPPLSF GSPSWNTSAL GTQNLLKSGV ERHASVSSSF KRSISSVSGS 360 ESERLSENHV FKDTDLAKYT SKISYDWEPS APFRPSHAIT RNLLLKKNLY NPIRDSIEHT 420 GVKDGQVKLS SSDQGSNKNV DVPSNSSREE KLLNSVHIEG TVKDNIFLLS SDNKLNDNTR 480 DKAELKVDGS DNNNEADVDL KGADQLQSES KAFKYFQSAL IEFVKELVKP TWREGLMSKD 540 AHKLIVKKAV DKVLSTLQPN QIPSTGESVN LYLSSSKPKL AKLVEGYIDK CDLTWICRNS 600 SARQGMSSCK LDQYNDEMKR TRAGILQFLH CNIFVFTGRF GSRVRQSLHG VANDENNFWP 660 KLFRPAVFAA S

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MASVMPPPPP KPSTSGIDDG EDEIEYEEIE VEEEVEVEEE VGEELEGEDV EEGGEHEIEE  60
GLTPACDEKQ GTATVQMLEP AGHPKQKQSG SASQSISISN PPTGIPKIQT STGGLKISGS  120
SEKEELHVYG ERTSRDNDPK APFYQIGEVN RGRRSPFIGD VNTALTGDAS SQKDNAINSV  180
TTETNHRAAE PVAKIMQMSP RLHVPQIRLR DPSPSAEFDR DNKKLRIPCE FFAKGWCIRG  240
NSCRFLHIGD GSAVVKTTKG TYEGNFSGSS VASHDNHHNT RISAFGSTLQ EMIGKESDIE  300
HKGPRSTELS HSHSRPPLSF GSPSWNTSAL GTQNLLKSGV ERHASVSSSF KRSISSVSGS  360
ESERLSENHV FKDTDLAKYT SKISYDWEPS APFRPSHAIT RNLLLKKNLY NPIRDSIEHT  420
GVKDGQVKLS SSDQGSNKNV DVPSNSSREE KLLNSVHIEG TVKDNIFLLS SDNKLNDNTR  480
DKAELKVDGS DNNNEADVDL KGADQLQSES KAFKYFQSAL IEFVKELVKP TWREGLMSKD  540
AHKLIVKKAV DKVLSTLQPN QIPSTGESVN LYLSSSKPKL AKLVEGYIDK CDLTWICRNS  600
SARQGMSSCK LDQYNDEMKR TRAGILQFLH CNIFVFTGRF GSRVRQSLHG VANDENNFWP  660
KLFRPAVFAA S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096339.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553960.1	0.0	protein FRIGIDA-ESSENTIAL 1 isoform X1
Refseq	XP_020553961.1	0.0	protein FRIGIDA-ESSENTIAL 1 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-21	C3H family protein