PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095923.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 693aa    MW: 80402.7 Da    PI: 6.6329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-2268159190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++  +kk+t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  XP_011095923.1  68 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPARKKQTGEHQRDRKSVRCGCDAKMYLSKEVvdgVSQWSVVQFSNVHNHELL 159
                     59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2068159IPR004330FAR1 DNA binding domain
PfamPF105511.9E-20291382IPR018289MULE transposase domain
PROSITE profilePS5096610.089563598IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-8570597IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-6573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MVSVQSKTVW MKRQQCPCGD WKCFITYEGE IDENNLGSQS IKNDSGPTET MVAPYVGMVF  60
KSDDEAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAR KKQTGEHQRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWSVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKVVQEN DALLTEKRES  240
ETVDLLEACR ANKEADPYFV YDVTVDENDK VENIAWAFGD SVHAYDMFGD VIYFDSTYRS  300
MTYGMLFGAW VGISNHGKLL VFGCAFLQDE TPRSYAWSFQ AFLRFMEGKY PKTIITDVDP  360
GLREAVRSEL PNTKHVISLY NILPRTSSWF SLPLGPRFPE FKFEFEELCH LESTDEFEFR  420
WNQMVSHFGL NSDKHIALLF SLRACWALPY TRGCFLARMD CTSYWKSIDI CLRGLIETQT  480
CLRGFLEQTG ILSNHKMQSH DEVQYMHLKT CLPIEDHARS VLTPFAFNGI QQEMVLAMQY  540
AASEMANGSY LVRHFKKVDG ERLVIWIPED EQIHCSCKEF ESTGILCRHA LRVLLFKNCF  600
QLPSKYLLNR WRQESSLFCY SGQSNPKIKD DWYQEFNSLT ETLFSEAILT RERSDFVHRE  660
LTKELRRLIS QVREMPAVDE VVLNVTLSPP NVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095923.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095923.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A022QJC30.0A0A022QJC3_ERYGU; Uncharacterized protein
STRINGMigut.M01435.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]