PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095222.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 482aa MW: 54708.7 Da PI: 4.2887 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 146.9 | 2e-45 | 123 | 481 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +l+ + ea+++g++el++ +++ ++e +p g++m+R+a + + +++ +++ +s++ +aa+k++++ P +f+h+t XP_011095222.1 123 HLMRAYGEAMDNGEKELVDVIVKSINEKTNPLGNTMERVAYNLFQSTENQGEY----------LRQE---SSKNFVAAFKVLYQSIPNGRFAHFT 204 6666778999******************************9888777766554..........3333...378999******************* PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN+aIle+v e + i+Dfd+++G+QWp+L++aL+ +++ lR+T v+s+e+ s + e ++rL A + gv+++++ k++ed+ XP_011095222.1 205 ANSAILESVPDEaAIIQIVDFDMGEGIQWPPLIEALSRKQK---ALRLTSVKSEEECtsSCWNFEDAKKRLLAHAGQYGVKLQIEE---KSIEDF 293 *********9995666********************99755...5********88878888899********************98...9***** PP GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqeadh..nse.sFlerflealeyysalfdsleak 274 +e +r+k+ +E l+ n+++ l ++ + + s +s +++k+ ++l ++ ++++ + ea n+ s+ f + +++y a+f+sle + XP_011095222.1 294 AFELMRMKKrgqgREWLVFNCMVGLPHMGR-RRSRSS-VAHFVKVARELLANlkgILTFGDGEAGEslNTCcSYTSYFDNLIRHYQAIFESLEGS 386 ********999999**************83.333333.79*********99855589****997763444369********************** PP GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdr 365 +p e+r+ +E +l++ + + g + ++ e++ k r++ e ++ +ls++ ++ak ++++ + + yrv +++++vl Wk+ XP_011095222.1 387 FPVYLaEARTAMESLFLAP----LMSPTGWS--MDWEEMTKGRDQA-ETQLEGRKLSQESLAEAKQIVNERE-NSYRVTierLRENEMVLRWKET 473 **88769999999998776....45556665..5667777777775.457999*******************.448888534459********** PP GRAS 366 pLvsvSaW 373 pLv vS W XP_011095222.1 474 PLVRVSTW 481 ******** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.756 | 95 | 482 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-43 | 123 | 481 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MDFCGIDDSD FSCSFTSLEE CSAISSSNSY VPNMFPDEFF DLETLVEDIQ IYPAMDGFET 60 IPTEEIEDIC EWINGNDAEG NELSPCLSLE SGQNSIVSPF MDEMSLLLPA DEMQVDDQLA 120 LLHLMRAYGE AMDNGEKELV DVIVKSINEK TNPLGNTMER VAYNLFQSTE NQGEYLRQES 180 SKNFVAAFKV LYQSIPNGRF AHFTANSAIL ESVPDEAAII QIVDFDMGEG IQWPPLIEAL 240 SRKQKALRLT SVKSEEECTS SCWNFEDAKK RLLAHAGQYG VKLQIEEKSI EDFAFELMRM 300 KKRGQGREWL VFNCMVGLPH MGRRRSRSSV AHFVKVAREL LANLKGILTF GDGEAGESLN 360 TCCSYTSYFD NLIRHYQAIF ESLEGSFPVY LAEARTAMES LFLAPLMSPT GWSMDWEEMT 420 KGRDQAETQL EGRKLSQESL AEAKQIVNER ENSYRVTIER LRENEMVLRW KETPLVRVST 480 WV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-13 | 180 | 481 | 72 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095222.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095222.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2G9H778 | 0.0 | A0A2G9H778_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00119.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 7e-27 | GRAS family protein |