PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095020.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 280aa    MW: 33118.6 Da    PI: 8.0675
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.8e-2429112186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r e++ ++ ++k++k lW+ +s +m+e+g++rs++qCk+kw+nl +ryk ++++e ++   +++++p++++l+
  XP_011095020.1  29 QWSIQETRDFLIIRAELDPTFMETKRNKLLWDLISTRMKEKGYSRSAEQCKCKWKNLVTRYKGCETMEAEGM--RQQQFPFYNELQ 112
                     7*********************************************************************84..5557*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.28E-232893No hitNo description
PfamPF138378.3E-1929113No hitNo description
PROSITE profilePS500906.983086IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPGHHQQLH HHYSLGIDAA GSSGDRFPQW SIQETRDFLI IRAELDPTFM ETKRNKLLWD  60
LISTRMKEKG YSRSAEQCKC KWKNLVTRYK GCETMEAEGM RQQQFPFYNE LQTIFAARMQ  120
RMLWLEAEGG GAATSSKKNK TAAQFSSDEE DENEDSEGEK GGAKKKRKVK GNYSNIPQVG  180
GSNSPMMIIK GIREMMEEFT KQQMEIEMQW LKAYEAREEE RRVKEMEWRQ TMEALENERI  240
MMDRRWRERE EQRKVREEAR AEKRDALITA LLNKLRREDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.10.0trihelix transcription factor GT-3b
RefseqXP_020553261.10.0trihelix transcription factor GT-3b
SwissprotO804506e-64TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A2Z7B1Q61e-136A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRINGMigut.J00154.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-50Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]