PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094664.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 369aa    MW: 40884.2 Da    PI: 7.6704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.5e-09132153426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f+r G Ck+Gd C +aHg
  XP_011094664.1 132 SACPDFRR-GACKRGDACEYAHG 153
                     67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5132155IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7132153IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118163187IPR000571Zinc finger, CCCH-type
SMARTSM0035619163186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMMMMMIGDH HTSNPTVQIP PWDYHYLEDP TAHIPSTHAN SPDASHHENA LAALQRYLPS  60
NKDDVVPSEH DDCIDDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTEC PFAHPGEKAR  120
RRDPRKYHYS GSACPDFRRG ACKRGDACEY AHGVFECWLH PARYRTQPCK DGVHCRRRVC  180
FFAHTPEQLR VLPYTTSPDA SPGRVVQDSF LPMGLFGSSP NSTLYSPPPS SPTTGSPPVS  240
PTGSMSLNSV NKLTESMRCL QLNKMKMGLG LSGSPPSWAL GIGSPRSPPT IRPGFMSPPS  300
TPIRAQVGPG LSAFDAWGTC CEEEPVMERV ESGRELRERI YAKLGKENSL DRVGRFNSAG  360
RGLGQLTTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094664.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094664.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-108C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G9G4Z80.0A0A2G9G4Z8_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.E01548.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-99C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]