PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094419.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 454aa    MW: 50433.7 Da    PI: 5.1191
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1141e-35661582103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++l+++isw e+g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F kg+++ll+k
  XP_011094419.1  66 FLSKTYDLVDDASLDSIISWGERGDSFVVWDPVEFARMILPRNFKHNNFSSFVRQLNTYGFRKIDADK---------WEFTNEGFVKGQRHLLKK 151
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  XP_011094419.1 152 IQRRKSH 158
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-5862155IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.01E-3562155IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-3763155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-186689IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3166155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-18104116IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340105129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-18117129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDPDGFQNPP GTTTFPPPQS FPLPLSMASS FEFKAGVAVS RAAGGESPSG MPKPLEFLHE  60
NPIPPFLSKT YDLVDDASLD SIISWGERGD SFVVWDPVEF ARMILPRNFK HNNFSSFVRQ  120
LNTYGFRKID ADKWEFTNEG FVKGQRHLLK KIQRRKSHQS QQIGSSYGSP SETGKAALGG  180
EIERLREERS FMMQELVELH QQQRGTVQRM EVVKEKLEEA EKRQKLMVSF LAKMFKNPAI  240
LARLQETREQ KSITSPRSMR KFVKHQTQEP STLSSQLEPC SSAFPSAISD SGPLALKQLP  300
DISLQDIGNS QVFGAVNVLS PVEDELAMVH EFLRTQEQTQ SIDPILTGKR ATTPQPQSRN  360
EYFVSFPEDF LMENSFPEFS IAWTGNMAME DVWNTGFGPG AGMSSSTTKF WSNLGNYDGP  420
ELGVNGGLSD ICGIGSLQQA GNSGIGGWTD EDSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-236315517120Heat shock factor protein 1
5d5u_B8e-236315526129Heat shock factor protein 1
5d5v_B8e-236315526129Heat shock factor protein 1
5d5v_D8e-236315526129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154LKKIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094419.10.0heat stress transcription factor A-2c isoform X1
TrEMBLA0A4D8YP321e-142A0A4D8YP32_SALSN; Heat shock transcription factor, other eukaryote
STRINGPOPTR_0006s11680.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-75heat shock transcription factor A3