PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094312.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 473aa MW: 52728.8 Da PI: 6.853 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 303 | 348 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L XP_011094312.1 303 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYIKEL 348 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.8E-53 | 28 | 200 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.847 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 300 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.28E-14 | 302 | 353 | No hit | No description |
Pfam | PF00010 | 1.1E-10 | 303 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-17 | 303 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-17 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MDDLIVSPSS SSSILSSVSP HQQLPPTLQK RLQYILQHQP DWWAYAILWQ TSKDDNGRIS 60 LSWADGHFQG TKEKNPKSGS QPERKKVMRG IQALIGENPD ITGPVDGDVT DAEWFYVMSL 120 AQSFSLGDGV VGKAFNSGSL IWLSGGNQLR FYNCQRAKEA QIHGMQTMVC IPTLNGVLEL 180 GSDVMITENW SLVQQVKSLF ESSSDPINNG STHALKFPEK TISFADTCLL PNLPDEAAKT 240 TPVLGKKQEQ PNSKAQKAQI FSYLDSEHSD SDCQFFLPET VETKRTPKKR GRKPNLGRDA 300 PLNHVEAERQ RREKLNHRFY ALRSVVPNVS RMDKASLLSD AVSYIKELKS KVEELETQLQ 360 RESKKVKTET TAETLDNQST TTSVDQVGPI TSLLEVEVKI VGVDGMIRVQ SDNGNYPAAR 420 LMDAIRELEL QVHHASMSCV NDLMLQDVVI RVPDGLRCEK ALKAALIRRL EAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-36 | 27 | 200 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-36 | 27 | 200 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-36 | 27 | 200 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-36 | 27 | 200 | 8 | 192 | Transcription factor MYC3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094312.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094312.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A142CD18 | 0.0 | A0A142CD18_9LAMI; Transcription factor MYC4 | ||||
STRING | POPTR_0002s17750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 4e-78 | bHLH family protein |