PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 803aa MW: 91153.4 Da PI: 6.9967 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.6 | 2.4e-24 | 79 | 165 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g++++++++ +tr+ +t+Cka++++kk+ +gkw ++++++eHnHe++p XP_011093714.1 79 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRQSSTS----ISTRSCPKTDCKASMHIKKRPEGKWFIYSFVEEHNHEISP 165 5****************************************998877....999**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-22 | 79 | 165 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.9E-24 | 247 | 338 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.9E-5 | 527 | 561 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.47 | 527 | 563 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-7 | 538 | 565 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MEIDLKLPSG KDGKLSTGEL HHDNDDDDNN DNEGNVADNV IVGGGDGVNV NVFDGNKSGI 60 SGYMPQNGME FETKEDAYSF YREYARSVGF GITIKASRRS KKSGKFIDIK IACSRFGSKR 120 QSSTSISTRS CPKTDCKASM HIKKRPEGKW FIYSFVEEHN HEISPDDFYN AVRGRKNTNP 180 NALCQKKGLQ LVLDEKAVQL LLDYFMHMQA EAPGFYYVTD FDKEGCMRNV FWVDLKGRHD 240 YVPFSDVVFF DTHYIRSEYN IPFVPVIGVN HHFQFILLGC AVIGEETQST LVWLMRSWLR 300 AVGGCSPKVV ITDNDKSLTE ATLEVFPDAS HYFCPWHVFG GVIPNLSHKL SGVEVFLAKL 360 KKCTYRSMTD EEFEKRWQKM VSKFDLGDDK WIQSLYEDRR KWMPTYMRDV FLGGFCTVER 420 SQSVASFFDK YLQKETTVEE FIDQYKLFLH ESCEEERKAE IEAQHAQPTL ISHSPFEKQM 480 SKLYTYTIYT KFQAEVSGIV ACTVGKEGED ERTITFRVDD LEMKQSFTVS WNKGKSDVCC 540 LCHLFEYSGF LCRHALSVLQ LLGISTVPSK YILKRWTRKA KIRDTTCLAS TNIIFRVQRL 600 NDLCKLAIRL GEEGSLSGEA YQVASHALEE ALERCAVMNN SMKCVLETNK TASQVLSNVG 660 QKEDNSIMKA LKTKKVPKKR KVQAEAESLS IRIQDSSQDV EQLNQRSLSL HDSFISPQDL 720 QGMELGTRIP VINGYYGVQQ GSQALGNLNS ISSLQDYYSD QPLMQGVLGN MNAVSARVNH 780 HTTQQNLQGL ETSVSTMSKH LRD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 674 | 680 | KVPKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093709.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_011093710.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_011093711.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X2 | ||||
Refseq | XP_020553551.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_020553552.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_020553553.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X2 | ||||
TrEMBL | A0A2G9GPS7 | 0.0 | A0A2G9GPS7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00594.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.4 | 0.0 | FAR1-related sequence 2 |