PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28355 Da PI: 6.9439 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.7 | 2.2e-24 | 65 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgC+a++ +++g+w+v+++++eHnHe+ap XP_011093603.1 65 LYCDYAQAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADT-NAVGYKKPETRTGCRAMISFACDDSGQWKVSRFVKEHNHEMAP 153 69***************************************99988.888999**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-21 | 65 | 153 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MENPGFDLEQ REAVSGDSDE EGVVRLRSGG EVVDVNEGQD DAHILELEKK LLEQVVYSEE 60 EAYMLYCDYA QAMGFNVRRG KQYYFMGTKR VRSKTYCCSK EGVKDDKADT NAVGYKKPET 120 RTGCRAMISF ACDDSGQWKV SRFVKEHNHE MAPPYAKPLV KSGQAILAAN VYGSGGALES 180 LSEHEKIREL SLQLAIAKNR AETFERQAAT YKRQLHMIVG HIEEHNQSLA KKLQKALHNV 240 KELESKDRLK S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093603.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093602.1 | 0.0 | uncharacterized protein LOC105173527 isoform X1 | ||||
TrEMBL | A0A4D8YWH6 | 1e-154 | A0A4D8YWH6_SALSN; Uncharacterized protein | ||||
STRING | Migut.J01148.1.p | 1e-167 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-28 | FAR1 family protein |