PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 285aa MW: 31633.6 Da PI: 7.0041 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.3 | 2.9e-24 | 99 | 187 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgC+a++ +++g+w+v+++++eHnHe+ap XP_011093602.1 99 LYCDYAQAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADT-NAVGYKKPETRTGCRAMISFACDDSGQWKVSRFVKEHNHEMAP 187 69***************************************99988.888999**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-21 | 99 | 187 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MHPKLLNSTA GSAAATSSSS TASVGNQNPV PIAEMENPGF DLEQREAVSG DSDEEGVVRL 60 RSGGEVVDVN EGQDDAHILE LEKKLLEQVV YSEEEAYMLY CDYAQAMGFN VRRGKQYYFM 120 GTKRVRSKTY CCSKEGVKDD KADTNAVGYK KPETRTGCRA MISFACDDSG QWKVSRFVKE 180 HNHEMAPPYA KPLVKSGQAI LAANVYGSGG ALESLSEHEK IRELSLQLAI AKNRAETFER 240 QAATYKRQLH MIVGHIEEHN QSLAKKLQKA LHNVKELESK DRLKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093602.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093602.1 | 0.0 | uncharacterized protein LOC105173527 isoform X1 | ||||
TrEMBL | A0A4D8YWH6 | 1e-159 | A0A4D8YWH6_SALSN; Uncharacterized protein | ||||
STRING | Migut.J01148.1.p | 1e-169 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14517 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-28 | FAR1 family protein |