PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093549.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 710aa MW: 76670 Da PI: 6.4056

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	287	307	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_011093549.1 287 PCPDFRK-GACRRGDMCEYAHG 307 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.2E-17	12	140	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.55E-17	16	139	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.3E-11	56	129	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.81E-14	58	138	No hit	No description
PROSITE profile	PS50297	16.175	60	136	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.13	60	90	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.0E-5	61	76	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.342	95	130	IPR002110	Ankyrin repeat
SMART	SM00248	1.0E-4	95	127	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.0E-5	114	128	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	282	308	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	286	309	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	287	309	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-5	287	307	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	315	345	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	64	317	340	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MKGMSKLSVE TEDSFSSLLE FAANNDIEAF RRSIELDLSG VDEAGLWYVR KIGSKQITQD 60 ERTPLMVAAT YGSVDVLKLI VALPEVDLNR SCGQDKWTAL HCAAFGGSVN AFDVVKLLLS 120 AGADPNIEDA NGRRPVDVII VPPKLPGAKA ALEDLLMNST SDGSVVDCNL HVSISTSSAS 180 SPVLSSSPSP GSRSPCSQSD TVSSPTAAKF SDVPANSVSE KKQYPVDPSL PDIRNSIYST 240 DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD 300 MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RQVCFFAHTQ EELRPLYVST GSGVPSPRSA 360 ASAASFMDMA AALSLLPGSP TSHSVMSPSA FNQTLSPTAN GMPHSSAAWP QPNVPTLHLP 420 GSNLQSSRLR SSLSARDIPP EDLNMLQDFD AQQLVLNDMA CFSQSQPNSA MLNRSGRSKS 480 TLTPSNLEEL FSAEITSSPR FPDQAVASGV FSPRHKSAVL NQFQQQQSIL SPINTNVFSP 540 RNVEHPLLQA SFGVSSPRMS PRSLDTVSPM SARLSAFAQR EKQQQQMHSL SSRDLGTGHG 600 PIVGPPVAAA WSKWGSPNGK ADWSVGGDDQ SCLKKSSTVE LNNGGNEPDL SWVQSLVKES 660 PPEMMDKTAA SASGAAPSGE CLKPNSQIDS IDHSVLGAWL EQMQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MKGMSKLSVE TEDSFSSLLE FAANNDIEAF RRSIELDLSG VDEAGLWYVR KIGSKQITQD  60
ERTPLMVAAT YGSVDVLKLI VALPEVDLNR SCGQDKWTAL HCAAFGGSVN AFDVVKLLLS  120
AGADPNIEDA NGRRPVDVII VPPKLPGAKA ALEDLLMNST SDGSVVDCNL HVSISTSSAS  180
SPVLSSSPSP GSRSPCSQSD TVSSPTAAKF SDVPANSVSE KKQYPVDPSL PDIRNSIYST  240
DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD  300
MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RQVCFFAHTQ EELRPLYVST GSGVPSPRSA  360
ASAASFMDMA AALSLLPGSP TSHSVMSPSA FNQTLSPTAN GMPHSSAAWP QPNVPTLHLP  420
GSNLQSSRLR SSLSARDIPP EDLNMLQDFD AQQLVLNDMA CFSQSQPNSA MLNRSGRSKS  480
TLTPSNLEEL FSAEITSSPR FPDQAVASGV FSPRHKSAVL NQFQQQQSIL SPINTNVFSP  540
RNVEHPLLQA SFGVSSPRMS PRSLDTVSPM SARLSAFAQR EKQQQQMHSL SSRDLGTGHG  600
PIVGPPVAAA WSKWGSPNGK ADWSVGGDDQ SCLKKSSTVE LNNGGNEPDL SWVQSLVKES  660
PPEMMDKTAA SASGAAPSGE CLKPNSQIDS IDHSVLGAWL EQMQLDQLVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093548.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_011093549.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_020553354.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G9IBP4	0.0	A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]