PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 710aa MW: 76670 Da PI: 6.4056 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 287 | 307 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_011093548.1 287 PCPDFRK-GACRRGDMCEYAHG 307 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.2E-17 | 12 | 140 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 8.55E-17 | 16 | 139 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.3E-11 | 56 | 129 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.81E-14 | 58 | 138 | No hit | No description |
PROSITE profile | PS50297 | 16.175 | 60 | 136 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.13 | 60 | 90 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.0E-5 | 61 | 76 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.342 | 95 | 130 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.0E-4 | 95 | 127 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.0E-5 | 114 | 128 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 282 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 286 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 287 | 309 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-5 | 287 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 315 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 64 | 317 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MKGMSKLSVE TEDSFSSLLE FAANNDIEAF RRSIELDLSG VDEAGLWYVR KIGSKQITQD 60 ERTPLMVAAT YGSVDVLKLI VALPEVDLNR SCGQDKWTAL HCAAFGGSVN AFDVVKLLLS 120 AGADPNIEDA NGRRPVDVII VPPKLPGAKA ALEDLLMNST SDGSVVDCNL HVSISTSSAS 180 SPVLSSSPSP GSRSPCSQSD TVSSPTAAKF SDVPANSVSE KKQYPVDPSL PDIRNSIYST 240 DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD 300 MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RQVCFFAHTQ EELRPLYVST GSGVPSPRSA 360 ASAASFMDMA AALSLLPGSP TSHSVMSPSA FNQTLSPTAN GMPHSSAAWP QPNVPTLHLP 420 GSNLQSSRLR SSLSARDIPP EDLNMLQDFD AQQLVLNDMA CFSQSQPNSA MLNRSGRSKS 480 TLTPSNLEEL FSAEITSSPR FPDQAVASGV FSPRHKSAVL NQFQQQQSIL SPINTNVFSP 540 RNVEHPLLQA SFGVSSPRMS PRSLDTVSPM SARLSAFAQR EKQQQQMHSL SSRDLGTGHG 600 PIVGPPVAAA WSKWGSPNGK ADWSVGGDDQ SCLKKSSTVE LNNGGNEPDL SWVQSLVKES 660 PPEMMDKTAA SASGAAPSGE CLKPNSQIDS IDHSVLGAWL EQMQLDQLVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093548.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_011093549.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_020553354.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2G9IBP4 | 0.0 | A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | XP_009799603.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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