PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093519.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 321aa    MW: 35522.3 Da    PI: 8.1621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-083453525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C f+++ G C yG+rC++ H
  XP_011093519.1 34 ICTFYQK-GVCAYGSRCRYDH 53
                    7******.************* PP
2zf-CCCH23.97.4e-08135157326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G+C++G +C+ +Hg
  XP_011093519.1 135 RPICS-FAAAGECPRGVNCPQIHG 157
                     79999.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.012127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-6326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1172956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00243055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-53253IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-63453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011133158IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5135157IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.18E-14190265No hitNo description
Gene3DG3DSA:3.30.40.104.8E-11197260IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00293200260No hitNo description
PfamPF000972.7E-7201258IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.666201259IPR001841Zinc finger, RING-type
SMARTSM001841.3E-8201258IPR001841Zinc finger, RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010310.099288313IPR000571Zinc finger, CCCH-type
SMARTSM0035618288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEC CEYSHDWKAP PNNICTFYQK GVCAYGSRCR YDHIKVSRSQ  60
PPASSSSADL AFAKVLPSAT ATFGVGIATC SVSSASSGPL DPPNRPAWGE NSMRHDIIHN  120
DDDFADVGNF DPADRPICSF AAAGECPRGV NCPQIHGDLC PTCRKHCLHP FRPHEREEHL  180
KTCDKRQKHL EALKGSQEIE CSVCLERVLS KPTAAERKFG ILSECNHPFC VSCIRNWRSS  240
SPASSSDANS ALRTCPICRK LSYFVIPSVI WYSSEEEKQE IVDSYKAKLR SIDCKHFNFG  300
NGTCPFGTSC FYKKSAFKTP A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553645.10.0E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-140C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A022QXV31e-168A0A022QXV3_ERYGU; Uncharacterized protein (Fragment)
TrEMBLA0A4D8Y9T11e-167A0A4D8Y9T1_SALSN; E3 ubiquitin-protein ligase makorin
STRINGMigut.N01471.1.p1e-168(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-129C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]