PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 329aa MW: 36359.2 Da PI: 8.234 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 34 | 53 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+++ G C yG+rC++ H XP_011093518.1 34 ICTFYQK-GVCAYGSRCRYDH 53 7******.************* PP | |||||||
2 | zf-CCCH | 23.8 | 7.6e-08 | 135 | 157 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G+C++G +C+ +Hg XP_011093518.1 135 RPICS-FAAAGECPRGVNCPQIHG 157 79999.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.012 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.3 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0024 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.98E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-6 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.361 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 133 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 135 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.14E-14 | 190 | 265 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.0E-11 | 197 | 260 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00224 | 200 | 260 | No hit | No description |
Pfam | PF00097 | 2.8E-7 | 201 | 258 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.666 | 201 | 259 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.3E-8 | 201 | 258 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 225 | 234 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 10.099 | 288 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 57 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSKRILCKFF AHGACLKGEC CEYSHDWKAP PNNICTFYQK GVCAYGSRCR YDHIKVSRSQ 60 PPASSSSADL AFAKVLPSAT ATFGVGIATC SVSSASSGPL DPPNRPAWGE NSMRHDIIHN 120 DDDFADVGNF DPADRPICSF AAAGECPRGV NCPQIHGDLC PTCRKHCLHP FRPHEREEHL 180 KTCDKRQKHL EALKGSQEIE CSVCLERVLS KPTAAERKFG ILSECNHPFC VSCIRNWRSS 240 SPASSSDANS ALRTCPICRK LSYFVIPSVI WYSSEEEKQE IVDSYKAKLR SIDCKHFNFG 300 NGTCPFGTSC FYKGFSGITT RGNRSAPKH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553645.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | E0X9N4 | 1e-140 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A022QXV3 | 1e-168 | A0A022QXV3_ERYGU; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A4D8Y9T1 | 1e-167 | A0A4D8Y9T1_SALSN; E3 ubiquitin-protein ligase makorin | ||||
STRING | Migut.N01471.1.p | 1e-169 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-128 | C3H family protein |
Publications ? help Back to Top | |||
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