PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093151.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 288aa    MW: 32070.1 Da    PI: 6.6145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-164893148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_011093151.1 48 RGPFTVEEEKLVIQLHSILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 93
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
Gene3DG3DSA:1.10.10.601.3E-102954IPR009057Homeodomain-like
PROSITE profilePS500904.172942IPR017877Myb-like domain
SuperFamilySSF466893.46E-2229102IPR009057Homeodomain-like
PROSITE profilePS5129425.6854397IPR017930Myb domain
SMARTSM007173.5E-154795IPR001005SANT/Myb domain
PfamPF002496.7E-154893IPR001005SANT/Myb domain
CDDcd001671.40E-115093No hitNo description
Gene3DG3DSA:1.10.10.601.0E-215594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQREHSTKPI KCFHLHLLSS SCVVTGLLRC GKSCRLRWTN YLRPDIKRGP FTVEEEKLVI  60
QLHSILGNRW AAIASQLPGR TDNEIKNLWN THLKKQLLQM GIDPQTHKPS STAKGPLNCL  120
LSSLSTCHMT QWESARLEAE VRLSRQSLLL IPQSAGNKSE ADFFLQLWNS DVGETFRKLD  180
KRENATSQSP ISSSSTKYDK LSGTVTEMAL LAAGSNLNDD AECKSGKSCV EDGRPGSDSS  240
SSNEMEDSSE SELQLLLNFP SNDDMSLLGQ TDCYYSLYPG IFTESTFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21299740108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093151.10.0myb-related protein Pp2 isoform X2
SwissprotQ9M2D92e-85MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9GLL91e-111A0A2G9GLL9_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-109(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-75myb domain protein 17