PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092508.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 236aa    MW: 24903.6 Da    PI: 8.156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003391113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C k+F++   L  H  +H
  XP_011092508.1  91 YRCNVCEKVFPSYQALGGHKASH 113
                     9***********99999998887 PP
2zf-C2H213.50.00021143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k+F++   L  H r+H
  XP_011092508.1 143 HACSICHKTFPTGQALGGHKRKH 165
                     67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.33E-990165No hitNo description
SMARTSM003550.009591113IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-1391115IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.13691118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM003550.051143165IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-12143167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTLEALTRPA PAGTLPSFRR HDFEPESWRR SAKRSKRVSD EEYIAGCLVM LARSGGDASP  60
SGDPAADDSE KQTEVVSPSP VLHSSLKDNC YRCNVCEKVF PSYQALGGHK ASHRSKPPTA  120
SVTATTETSN YTSGTNYSSG RPHACSICHK TFPTGQALGG HKRKHYEGVI GRSTGAKGGV  180
ISTDGGSSLS GVTSSDGGAT SISHGDGDGH HATLIRRNLD LNLPPPPELD LSLYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834RRSAKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092508.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092508.11e-173zinc finger protein AZF2-like
SwissprotQ9SSW26e-35AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A2G9HQF77e-60A0A2G9HQF7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.25e-30zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]