PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092357.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 353aa    MW: 38674.5 Da    PI: 7.2345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08103127126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ GtC+y  +C+FaH+
  XP_011092357.1 103 YKTKLCCKFRA-GTCPYITNCNFAHS 127
                     9**********.*************8 PP
2zf-CCCH17.29.1e-06174199126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yG++C+F H+
  XP_011092357.1 174 YKGRHCKKFYTDEGCPYGENCTFLHD 199
                     77888********************7 PP
3zf-CCCH42.31.3e-13234259126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_011092357.1 234 WKTRICNKWELTGYCPFGSKCHFAHG 259
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.61E-899133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-15100135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235102129IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-6103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-9171201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7172201IPR000571Zinc finger, CCCH-type
SMARTSM003560.33173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986173201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-17229263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-10230264IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422233261IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDYRRENGFS SGNVVQVLSG NSGNAVNESW GAGYADQAVW ATEDDYGMWN AEASFDNNSN  60
SNYDGRVSQS RSGSEPPNKR SRNSQSGDLA ASNRSKAIGK MFYKTKLCCK FRAGTCPYIT  120
NCNFAHSIEE LRKPPPNWQE IVAAHEEERA VSSEPREEFQ IPILGVSDDT QRSYKGRHCK  180
KFYTDEGCPY GENCTFLHDE QSKARESVAI SLGPGSGGGY GSNGSSSALK PSNWKTRICN  240
KWELTGYCPF GSKCHFAHGA AELHRYGGGP MDSEVKDSST PDAKQGVPPA KTSVDIIVAS  300
ATSVPHSDGY HHIGVPSQRL SNVIQKTGQR STQKWKGPDK ISKIYGDWID DLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.10.0zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ9LQM31e-125C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2G9G2L70.0A0A2G9G2L7_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.N01445.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein