PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011092155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 397aa MW: 43652.5 Da PI: 6.9215 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 152 | 175 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC++f+ GtC++ ++C+FaH+ XP_011092155.1 152 KTKLCCRFQV-GTCSFNEKCNFAHS 175 8*********.*************8 PP | |||||||
2 | zf-CCCH | 34.6 | 3.2e-11 | 281 | 307 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + G+C++ +rC+FaHgp XP_011092155.1 281 WKTRLCNKWESAGYCPFRSRCHFAHGP 307 8************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.24E-8 | 148 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-12 | 151 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-7 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.188 | 220 | 248 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 34 | 224 | 247 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-16 | 277 | 311 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-9 | 278 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 280 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 281 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDSHQPSGSP VNNVIEFQSG NSGISFNEDM VLGSSDQAVW ASEDGISNKE ASVNMNSKAN 60 HEESLSQFEV GSELAHKRPT VNGSSDQAVW VSEDDISNKE ASVNMNPKAN HEERLSQFEV 120 ESELTHKRAR NSPLVDLAAS NSSRAFGVLF HKTKLCCRFQ VGTCSFNEKC NFAHSIEELR 180 QPPLNWQKGV AARKEEQGSP LVPREVTQIL LVGSNDETQG CTSEQCMKLC SEEGCPYGEN 240 CNLIHYEDSK NREHLAICLL PGTDGRYRGN RSKSTLNAAN WKTRLCNKWE SAGYCPFRSR 300 CHFAHGPAEL RRYGGGLPIP EAKDSSAYGS KGGAVPTKAS AGAMNAPTSS VPHPYRVGAP 360 SRRLSIMMKR PGETPTRRWK GPESISKVYG DWIDDLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011092155.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092146.1 | 0.0 | zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_020549081.1 | 0.0 | zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_020549089.1 | 0.0 | zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_020549092.1 | 0.0 | zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_020549094.1 | 0.0 | zinc finger CCCH domain-containing protein 56-like | ||||
TrEMBL | A0A068UXL7 | 3e-98 | A0A068UXL7_COFCA; Uncharacterized protein | ||||
STRING | XP_010096556.1 | 4e-95 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-69 | C3H family protein |