PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091956.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 304aa    MW: 33853 Da    PI: 6.2569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_011091956.1 14 KGPWTPEEDEKLVEYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_011091956.1  67 RGPFTPDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.528961IPR017930Myb domain
SuperFamilySSF466894.59E-3111108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002497.5E-171461IPR001005SANT/Myb domain
CDDcd001671.32E-111661No hitNo description
PROSITE profilePS5129424.95162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001676.61E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDEKLVEYIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPDEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLLMG  120
IDPQTHEPSP VPNGPLNRLP SSPSTRHMAQ WESARLEAEA RLSRESLLLI PSSASPLGKP  180
DTDYFLRLWN SEVGETFRNL SNGEKTDTQS PVSSSSKCGS LSGTTTEIEL IAADSSAAPE  240
SKKPCNEYVQ ARMDSCSSDE LEDSSESTLQ LLLDFPSNNN DMSFLGQTDC YSLYPGIYTD  300
SHFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.10.0myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-129MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9G4X21e-155A0A2G9G4X2_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-113myb domain protein 17