PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091388.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 284aa    MW: 30952.9 Da    PI: 8.0029
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18200234135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011091388.1 200 CLHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRL 234
                     99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057194230IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-17194248IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-15196257No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14197232IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.91E-14199249No hitNo description
PfamPF003208.8E-16200234IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEILDATAAC FVVDDELLNF TLDGEGEDDQ VTKTILKGCY ASSSSSSSLE TTTFSDENRT  60
GSFPEFVEEE LEWLSNKDAF PAVETCFGIL ADNPELVLSH QSPVSVLENS SSCSSNSNSS  120
SNGNGIAIAS CCGSLKVPAK FPVRARSKRR RRKRRAGFGE LPSQHCVWLD QVNIKKQESS  180
FLLPPLSTMR TNGASMGRRC LHCQADKTPQ WRAGPMGPKT LCNACGVRYK SGRLLPEYRP  240
ASSPTFSSIL HSNSHRKVVE MRKQKQLGEG GGITVNEACG YRVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152KRRRRK
2148154RRRRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0334113e-55KJ033411.1 Sesamum indicum clone TilSSR_4612 microsatellite sesame_4612 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091388.10.0GATA transcription factor 1
SwissprotQ8LAU99e-49GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2G9GS871e-119A0A2G9GS87_9LAMI; Uncharacterized protein
STRINGXP_009767386.15e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-48GATA transcription factor 1