PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091328.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 262aa    MW: 29765.9 Da    PI: 5.0892
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.6e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  ++ ++G  +W++ +r  g+ R++k+c++rw++yl
   XP_011091328.1 14 KGAWSEEEDNKLRAYILRYGHWNWRLLPRFAGLDRCGKSCRLRWLNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding52.61e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE++l+v+++ +lG++ W++Ia++++ gR+++++k++w+++
   XP_011091328.1  67 RGSYTKEEQDLIVKLHDELGNK-WSAIAAKLP-GRSDNEIKNYWHTH 111
                      8999******************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2961IPR017930Myb domain
SuperFamilySSF466891.42E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002498.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201568IPR009057Homeodomain-like
CDDcd001672.03E-81661No hitNo description
PROSITE profilePS5129422.43262116IPR017930Myb domain
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2469113IPR009057Homeodomain-like
CDDcd001671.09E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRAARVDEK GLRKGAWSEE EDNKLRAYIL RYGHWNWRLL PRFAGLDRCG KSCRLRWLNY  60
LKPGLKRGSY TKEEQDLIVK LHDELGNKWS AIAAKLPGRS DNEIKNYWHT HFETRGRKAN  120
KSGGQAGIFQ EEQSSEITHC NTSCGKAFAR SSCDDKPDDQ VSSDMYILES SSSETVVSGA  180
VKWDSDSSDE QNCSEIFSGS DSLFFYSGDF ARLSESTFGF HDGFWSEPFM VDKSSCVQDF  240
NCWAPDEEAL FSPGLSSFDD YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091328.10.0myb-related protein Myb4-like
TrEMBLA0A2G9FWY21e-74A0A2G9FWY2_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-53myb domain protein 15