PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090876.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family SBP
Protein Properties Length: 775aa    MW: 86433.9 Da    PI: 7.3049
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.91.1e-36141217177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv+gCead++e+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr++ 
  XP_011090876.1 141 RCQVPGCEADITELKGYHKRHRVCLRCANASAVVLDGESKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRRP 217
                     6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-29136203IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.744139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-34140219IPR004333Transcription factor, SBP-box
PfamPF031102.7E-27142215IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MQQNPPSPIL APAYLPRNLE MASAAPHVPP GETASSSLFD WSDFLDFNLD ETLDFSFPQP  60
ELGSGPEIER SQPLENSGRV RKRDPRLVCS NFLAGRVPCA CPELVPCACP ELDEQLAEEE  120
LALPGKKRAR MVKLSGGAPV RCQVPGCEAD ITELKGYHKR HRVCLRCANA SAVVLDGESK  180
RYCQQCGKFH LLSDFDEGKR SCRRKLERHN NRRRRRPSDS RGGTQKEAQQ ISLADDVSGD  240
DDTGKDGICR RSQTEEQELL LESDAPASML CSALGPENPQ SDSVASFAAS DKMRISGQTQ  300
NPKYKHSPPY SDNKNTFSSM CPAGRISFKL YDWNPAEFPR RLRHQIFQWL ANMPIELEGY  360
IRPGCTILTA FIAMPKPTWV KLLEEPAQCI KELLASPGNI LSGRGTMLVY LNDMMFCVRK  420
DANSVMKIKV KDRSPKLHYI YPTCFEAGRP MEFVACGSYL LQPKFRFLVS FAGRYLAYNI  480
CVSSPCCKKG DSNRFEHQLV KISVPQTDMN LLGPAFIEVE NQSGLSNFIP VLVGDKETCA  540
EMEILQQKFD SSLSSQDQQQ SPPRPECEVF ASRQAQLSEF VLDVAWSLKK PVLEQPLTSS  600
HIQRFNNLLN CLIEKESSVI LERVFCNMKF AMGNNLVDHI SDADMRSLHN NMGIAQSMLD  660
RKLQDKDFTA TSVLDGNVYS QSFQKDDQCA VLAANMGGHE TRPLLNGEVI MNVSLQPSPQ  720
KSFNQLLTRT SLPSRPLIMA IAVLGICVGV CAVVLHPQRV SDIATTIRRC LFDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-43137222186squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202214RRKLERHNNRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090876.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A2G9GY100.0A0A2G9GY10_9LAMI; Uncharacterized protein
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7