PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090830.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 762aa MW: 87371.7 Da PI: 8.0714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe+ XP_011090830.1 43 EFYSCYATQVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKKEHNHEF 117 6*************************************987..............589*************************98 PP
2	FAR1	66.4	7.7e-21	194	269	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe+ XP_011090830.1 194 KFYYTYAANIGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHEFE 269 6************************************9998..............4899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-16	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-16	194	268	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-27	371	463	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	646	684	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-8	655	681	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	659	686	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MTVRTKPAAL LVAQSNGHRD DEGESKMEPQ VGLEFDSAEE AQEFYSCYAT QVGFKIRIGQ 60 LYRSRVDGSV ISRRFVCSKE GFQTNSRTGC PAFIRVQKVD SGKWVLANIK KEHNHEFEAS 120 GEICPPRIQR KSFPTPRSSV GGASRTGIRS HEDDSPSDIV DIKRLKKEEM DAAGGPVGEP 180 YKGLEFNSAN DAYKFYYTYA ANIGFRIRIG QLFRSKHDGS ITSRRFVCSK EGHQHPSRVG 240 CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDPSRLVSV ASKGYNREEG SSVLENLDLV 300 ETNGGLSLVK RVRESNIGSD WYNVLLDYFQ SRQAEDTGFF YAVEMREGKG MNIFWADARS 360 RFSCSQFGDA IVFDTTYRRG SYCLPFASFV GVNHHRQPVL LGCAVIAEES EESFTWIFQA 420 WARSMSGCRP VSIIADQDRP IQQSIAQVFP GTHHRFSAWQ ILAKEQENLG ALLSMDTEFK 480 FEYETCIFQS QTASEFDSAW NMLMNKYNLR ENTWFKEMYR MRKSWVPLHI KGTFFAGIPV 540 DGSLKSYFGT LLSAQTPLNE FIVRYEKALE QRREEERKED FNSFNLQAVL HTKDPIEEQC 600 RRLYTITMFK VFQKELLECY SYVGIKINVE GAISRYLVQK CGNGDERNTV AFNASTLNIS 660 CSCKMFEFEG VLCRHALKVF QIMNIRELPS RYILHRWSKN AKYGILRDAD SGGGSQDFKA 720 LMMWSLREEA RNYIEAGAAS LERYKLAFEI MQEGRRNLCW QN

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MTVRTKPAAL LVAQSNGHRD DEGESKMEPQ VGLEFDSAEE AQEFYSCYAT QVGFKIRIGQ  60
LYRSRVDGSV ISRRFVCSKE GFQTNSRTGC PAFIRVQKVD SGKWVLANIK KEHNHEFEAS  120
GEICPPRIQR KSFPTPRSSV GGASRTGIRS HEDDSPSDIV DIKRLKKEEM DAAGGPVGEP  180
YKGLEFNSAN DAYKFYYTYA ANIGFRIRIG QLFRSKHDGS ITSRRFVCSK EGHQHPSRVG  240
CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDPSRLVSV ASKGYNREEG SSVLENLDLV  300
ETNGGLSLVK RVRESNIGSD WYNVLLDYFQ SRQAEDTGFF YAVEMREGKG MNIFWADARS  360
RFSCSQFGDA IVFDTTYRRG SYCLPFASFV GVNHHRQPVL LGCAVIAEES EESFTWIFQA  420
WARSMSGCRP VSIIADQDRP IQQSIAQVFP GTHHRFSAWQ ILAKEQENLG ALLSMDTEFK  480
FEYETCIFQS QTASEFDSAW NMLMNKYNLR ENTWFKEMYR MRKSWVPLHI KGTFFAGIPV  540
DGSLKSYFGT LLSAQTPLNE FIVRYEKALE QRREEERKED FNSFNLQAVL HTKDPIEEQC  600
RRLYTITMFK VFQKELLECY SYVGIKINVE GAISRYLVQK CGNGDERNTV AFNASTLNIS  660
CSCKMFEFEG VLCRHALKVF QIMNIRELPS RYILHRWSKN AKYGILRDAD SGGGSQDFKA  720
LMMWSLREEA RNYIEAGAAS LERYKLAFEI MQEGRRNLCW QN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090830.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090830.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X2
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]