PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090493.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 321aa    MW: 36098.3 Da    PI: 6.5579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-05162181120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_011090493.1 162 FSCPLCFKTFNRYNNMQMHM 181
                     89*****************9 PP
2zf-C2H214.20.00013246268123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_011090493.1 246 FACRKCGKAFAVRGDWRTHEKNC 268
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61162184IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5162181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66162189IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6228266No hitNo description
Gene3DG3DSA:3.30.160.605.5E-6233266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035554246266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MADPYSNYFN NGWMFTLHPT TPDPPYHNFS LSYGSSPTSP PLKEALPLLS LSPTIRHDSQ  60
ESSTEVEMSI KNNEEHQEQE EEEEDDDEDE TVTVTLNLGL STASCTFTDS DLIPRLSSSS  120
TVVNNKEEVT VASSGYTTTS PLNKGQYWIP TPAQILIGPT QFSCPLCFKT FNRYNNMQMH  180
MWGHGSQYRK GPLSLRGTQP TAMLRLPCYC CAPGCRNNID HPRAKPLKDF RTLQTHYKRK  240
HGIKPFACRK CGKAFAVRGD WRTHEKNCGK LWYCACGSNF KHKRSLTDHV KAFGSGHGAC  300
GVDCFEEEEE GSEIEQGFCN Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090493.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0560503e-58KJ056050.1 Sesamum indicum clone TilSSR_27251 microsatellite Sesame_27251 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090493.10.0zinc finger protein WIP2
SwissprotQ8W0311e-125ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2I4DJY31e-151A0A2I4DJY3_JUGRE; zinc finger protein WIP2-like
TrEMBLA0A438HM341e-151A0A438HM34_VITVI; Zinc finger protein WIP2
STRINGVIT_06s0004g01870.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-123WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]