PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090357.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 277aa    MW: 31891.1 Da    PI: 8.1807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06121140120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  n++ H+
  XP_011090357.1 121 FSCNICSKTFNRYNNMQMHM 140
                     89*****************9 PP
2zf-C2H2140.00015205228123
                     EEET.TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                     ++C   CgksF  k + ++H +++
  XP_011090357.1 205 FVCRkSCGKSFAVKGDWRTHEKNC 228
                     89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-5112144No hitNo description
PROSITE profilePS5015710.471121148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-5121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-6191226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.32E-5191226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSFLKFPVFY QQQQNKGDGY FYETVQCLPL LSRLTDHEKQ VKEEDDDVDV DDENVTVALH  60
IGLPDVGVEV ESSDDHVHQQ KGYGFKEENE YHVKKSCKSG CSERRFWIPT PAQILVGPMQ  120
FSCNICSKTF NRYNNMQMHM WGHGSEFRKG PESLRGTQPA AMLRLPCYCC AQGCKNNINH  180
PRAKPLKDFR TLQTHYKRKH GAKPFVCRKS CGKSFAVKGD WRTHEKNCGK LWYCTCGSDF  240
KHKRSLKDHI RSFGKGHSPH PSLEGFEDDK ECVTDES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090357.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-118ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A4D8ZLM01e-147A0A4D8ZLM0_SALSN; Uncharacterized protein
STRINGcassava4.1_025979m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-117WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]