PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | YABBY | ||||||||
Protein Properties | Length: 179aa MW: 20072.9 Da PI: 9.6221 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 175.3 | 3.7e-54 | 4 | 149 | 14 | 170 |
YABBY 14 qCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.sened 106 +C+ vsvP +s+ +++vtvrCGhC++llsvn+ + l ++ ++ +++++++ +es +s + +++ + + + XP_011090283.1 4 HCSLNYVTRTVSVPCSSMlSSIVTVRCGHCANLLSVNIGALLHSLHLQDF-----QQ-------PQKQQTTVEAAWKESIGSSSKCNMFgPLQPQ 86 6777777789****9997257******************99999887774.....22.......2222222222222222222222233377889 PP YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWah+P+ihfgl XP_011090283.1 87 HEQPKMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHLPHIHFGL 149 99999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.4E-58 | 4 | 149 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.33E-9 | 89 | 143 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.6E-6 | 97 | 143 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.81E-6 | 103 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MLPHCSLNYV TRTVSVPCSS MLSSIVTVRC GHCANLLSVN IGALLHSLHL QDFQQPQKQQ 60 TTVEAAWKES IGSSSKCNMF GPLQPQHEQP KMAPIRPPEK RQRVPSAYNR FIKEEIQRIK 120 ASNPEISHRE AFSTAAKNWA HLPHIHFGLK HEANKQAKLD HNSSVAAGDQ RSQESLAFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090283.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090283.1 | 1e-132 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 1e-57 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | Q6SRZ8 | 1e-79 | Q6SRZ8_ANTMA; YABBY2-like transcription factor YAB2 | ||||
STRING | Migut.D02379.1.p | 5e-72 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-56 | YABBY family protein |
Publications ? help Back to Top | |||
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