PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 872aa MW: 98921.7 Da PI: 6.8391 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.7 | 2.1e-14 | 59 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGFs+r++ ++ sk ++ t+r+f Cs g +++ ++ C+a+l+v+ + ++kw+vtk+++eH+H+++ XP_011090246.1 59 FYEDYARHVGFSTRVNFNR-SKADRMATSREFLCSGDGLKKRAGES--------------CRAMLRVESKCENKWVVTKFVKEHSHTIV 132 9*************99755.569999*************9998777..............**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-10 | 59 | 132 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.2E-28 | 269 | 361 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.9E-11 | 547 | 581 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.189 | 547 | 583 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.0E-8 | 558 | 585 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MEERNLVQRG GITDDGDDDS NYSGEMDALG HSLVQDEDGI FAEPHVGMEF DSEDAAKMFY 60 EDYARHVGFS TRVNFNRSKA DRMATSREFL CSGDGLKKRA GESCRAMLRV ESKCENKWVV 120 TKFVKEHSHT IVSHSKVHHL RPKRYFAATT ENVPETFHGV DIVPSGTMYV SVDGNSVPAE 180 MNHVGKNMPA SRLNQSVKNI SALGYTEGYS SRRTLGRDAQ NLLDYFKKMQ AENPGFYYAI 240 QLDDENRMAN AFWADARSRT AYSHFGDAVT LETTYRTNRY TVPFAPFTGV NHHGQIILFG 300 CALLLDESEA TFVWLFKTFL AAMNDRAPVS LTTDKDRAIQ AAVTQVFPEA RHCVNKWHVL 360 REGEEKMAHV CLAHPHFQAE LCNCINMTKT IEEFESFWTS ILDKYDLKRN DWLHSIYDAR 420 RQWVPVYFRD SFFAAVTPSL GFESSFFDGY VNQQTTLPMF FRQYERALEN SFEREVEADF 480 DTICTTPVLR TPSPMEKQAA NLYTKRIFSK FQEELVETFV YTANRVDGDG HNSTYRVAKF 540 EDDHKAYFVS LNIAEMKANC SCKMFEYSGI LCRHVLTVFT VTNVLTLPSH YILKRWTRNA 600 KTMVVADEHS EIQVHESLTT RYNNLCKEAI RFAEEGAIAS ETYISALVSL REVGKKVAGV 660 KKSVARVAPS SSQVSGIGYD DRRPSIVKPE MTPLLWPQQD EIVRRFNLND AGVPGQPISN 720 SNVPRVGSLK RDVGHTDNMV VLPCLKSMTW VMENKNSTPA DRVAVINLKL QDYARTPAGE 780 SEVKFSLSSV TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES EVKFQVSRDT 840 LGAMLRSMAY IREQLSNTVE PRQDNPTKRL RK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090246.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090244.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_011090246.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_011090247.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_020552429.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2G9GF54 | 0.0 | A0A2G9GF54_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02416.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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