PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090245.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 872aa MW: 98921.7 Da PI: 6.8391

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.1e-14	59	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGFs+r++ ++ sk ++ t+r+f Cs g +++ ++ C+a+l+v+ + ++kw+vtk+++eH+H+++ XP_011090245.1 59 FYEDYARHVGFSTRVNFNR-SKADRMATSREFLCSGDGLKKRAGES--------------CRAMLRVESKCENKWVVTKFVKEHSHTIV 132 9***********99755.569999*********9998777..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-10	59	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.2E-28	269	361	IPR018289	MULE transposase domain
Pfam	PF04434	5.9E-11	547	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.189	547	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-8	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MEERNLVQRG GITDDGDDDS NYSGEMDALG HSLVQDEDGI FAEPHVGMEF DSEDAAKMFY 60 EDYARHVGFS TRVNFNRSKA DRMATSREFL CSGDGLKKRA GESCRAMLRV ESKCENKWVV 120 TKFVKEHSHT IVSHSKVHHL RPKRYFAATT ENVPETFHGV DIVPSGTMYV SVDGNSVPAE 180 MNHVGKNMPA SRLNQSVKNI SALGYTEGYS SRRTLGRDAQ NLLDYFKKMQ AENPGFYYAI 240 QLDDENRMAN AFWADARSRT AYSHFGDAVT LETTYRTNRY TVPFAPFTGV NHHGQIILFG 300 CALLLDESEA TFVWLFKTFL AAMNDRAPVS LTTDKDRAIQ AAVTQVFPEA RHCVNKWHVL 360 REGEEKMAHV CLAHPHFQAE LCNCINMTKT IEEFESFWTS ILDKYDLKRN DWLHSIYDAR 420 RQWVPVYFRD SFFAAVTPSL GFESSFFDGY VNQQTTLPMF FRQYERALEN SFEREVEADF 480 DTICTTPVLR TPSPMEKQAA NLYTKRIFSK FQEELVETFV YTANRVDGDG HNSTYRVAKF 540 EDDHKAYFVS LNIAEMKANC SCKMFEYSGI LCRHVLTVFT VTNVLTLPSH YILKRWTRNA 600 KTMVVADEHS EIQVHESLTT RYNNLCKEAI RFAEEGAIAS ETYISALVSL REVGKKVAGV 660 KKSVARVAPS SSQVSGIGYD DRRPSIVKPE MTPLLWPQQD EIVRRFNLND AGVPGQPISN 720 SNVPRVGSLK RDVGHTDNMV VLPCLKSMTW VMENKNSTPA DRVAVINLKL QDYARTPAGE 780 SEVKFSLSSV TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES EVKFQVSRDT 840 LGAMLRSMAY IREQLSNTVE PRQDNPTKRL RK

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MEERNLVQRG GITDDGDDDS NYSGEMDALG HSLVQDEDGI FAEPHVGMEF DSEDAAKMFY  60
EDYARHVGFS TRVNFNRSKA DRMATSREFL CSGDGLKKRA GESCRAMLRV ESKCENKWVV  120
TKFVKEHSHT IVSHSKVHHL RPKRYFAATT ENVPETFHGV DIVPSGTMYV SVDGNSVPAE  180
MNHVGKNMPA SRLNQSVKNI SALGYTEGYS SRRTLGRDAQ NLLDYFKKMQ AENPGFYYAI  240
QLDDENRMAN AFWADARSRT AYSHFGDAVT LETTYRTNRY TVPFAPFTGV NHHGQIILFG  300
CALLLDESEA TFVWLFKTFL AAMNDRAPVS LTTDKDRAIQ AAVTQVFPEA RHCVNKWHVL  360
REGEEKMAHV CLAHPHFQAE LCNCINMTKT IEEFESFWTS ILDKYDLKRN DWLHSIYDAR  420
RQWVPVYFRD SFFAAVTPSL GFESSFFDGY VNQQTTLPMF FRQYERALEN SFEREVEADF  480
DTICTTPVLR TPSPMEKQAA NLYTKRIFSK FQEELVETFV YTANRVDGDG HNSTYRVAKF  540
EDDHKAYFVS LNIAEMKANC SCKMFEYSGI LCRHVLTVFT VTNVLTLPSH YILKRWTRNA  600
KTMVVADEHS EIQVHESLTT RYNNLCKEAI RFAEEGAIAS ETYISALVSL REVGKKVAGV  660
KKSVARVAPS SSQVSGIGYD DRRPSIVKPE MTPLLWPQQD EIVRRFNLND AGVPGQPISN  720
SNVPRVGSLK RDVGHTDNMV VLPCLKSMTW VMENKNSTPA DRVAVINLKL QDYARTPAGE  780
SEVKFSLSSV TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES EVKFQVSRDT  840
LGAMLRSMAY IREQLSNTVE PRQDNPTKRL RK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090245.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090244.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090246.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090247.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020552429.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G9GF54	0.0	A0A2G9GF54_9LAMI; Uncharacterized protein
STRING	Migut.N02416.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]