PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011090087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 181aa MW: 21025.2 Da PI: 9.8689 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 5 | 66 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++R+++t+eql +L+el+++ +p+a+++++++++l +++ + V++WFqN++a++++ XP_011090087.1 5 KSSRWCPTPEQLMILQELYRRgLTNPNASQIQKITAHLsfygQIQGKSVFYWFQNHKARDRQ 66 679*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 111.9 | 3.4e-36 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iL+ely++Gl +Pn+++iq+ita+L+ yG+i++k VfyWFQN+kaR+rqk XP_011090087.1 5 KSSRWCPTPEQLMILQELYRRGLTNPNASQIQKITAHLSFYGQIQGKSVFYWFQNHKARDRQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.22 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-5 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-4 | 5 | 67 | No hit | No description |
Pfam | PF00046 | 6.3E-17 | 5 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-11 | 6 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 7 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MSPPKSSRWC PTPEQLMILQ ELYRRGLTNP NASQIQKITA HLSFYGQIQG KSVFYWFQNH 60 KARDRQKLRK KLAHQLLQQH VLLGLYQHNH QHNLSGFTHH LSSSRCTARN LYPQGGGGCE 120 EAPAVVMNHH RSKDCVMRMY GDDVTMMIMD VDPNFPCCRN KRLETLELFP LRSPAVKDQE 180 R |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011090087.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090087.1 | 1e-136 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A1Q3BTT3 | 8e-49 | A0A1Q3BTT3_CEPFO; Homeobox domain-containing protein | ||||
STRING | XP_010253422.1 | 3e-49 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28610.1 | 6e-34 | WOX family protein |