PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089967.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 407aa    MW: 44234.8 Da    PI: 8.2507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07233255123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_011089967.1 233 HYCQVCGKGFKRDANLRMHMRAH 255
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.42E-6231258No hitNo description
PROSITE profilePS5015712.653233260IPR007087Zinc finger, C2H2
SMARTSM003550.0034233255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-6233259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SMARTSM0035569288321IPR015880Zinc finger, C2H2-like
SMARTSM0035522326348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MITGATPCYP NGPQGIPIYG SGPDQASSLE ANSSASSTQP SSFLYNLSVL KDKVHQVQSL  60
ASIFFSYDHG HPPESTAIAV PTMGTLIQEI IVTASSMMFA CQQMALGSPS INNNAAFDLQ  120
PHHRPSNITT NAASAGGLAP SADNPAVDER GPAAAFFSSH HDALDHWYSD SCNNCNPTDD  180
NNISNSTIEG SNCARELPQK TETNEGSSQG LLSPKNYDIV ELDAADLLAK YTHYCQVCGK  240
GFKRDANLRM HMRAHGDEYK SSAALSNPMK IASTMSGESN IPKLPRKYSC PQEGCRWNKN  300
HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DLKWLCSCGT  360
TFSRKDKLMG HVALFIGHTP VINSSTKLGS GAQNSAQMQV IKAGKND
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089967.10.0zinc finger protein STOP1 homolog
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2G9G3S90.0A0A2G9G3S9_9LAMI; Uncharacterized protein
STRINGMigut.N02542.1.p1e-162(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-108C2H2 family protein