PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 205aa MW: 24096.2 Da PI: 3.988 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.4 | 3e-14 | 18 | 92 | 14 | 90 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + +p f+ +++ + +l+d+ g+ We+ + + ++++y+ ++ W +F+++n L+ gDfvvF ++g++ f XP_011089901.1 18 QEMQIPPAFVPKIQRA--LAQGFVLRDRYGNLWEMGVATSSGDKWYFRKEDWPQFCEENSLEMGDFVVFNYKGNNLF 92 56889*****999755..44459**************88888888**************************997655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-16 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-17 | 9 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-12 | 9 | 97 | No hit | No description |
SMART | SM01019 | 1.1E-8 | 10 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-12 | 18 | 91 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.182 | 20 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDSGTGCYSF FKIILTCQEM QIPPAFVPKI QRALAQGFVL RDRYGNLWEM GVATSSGDKW 60 YFRKEDWPQF CEENSLEMGD FVVFNYKGNN LFDFLLFGND ACEKKGVGAL KFRVKEEEVD 120 DNQEHDEHDD EYVQEEESGE HDDDDDDYVE EEESGEHDDD DDDYVEEEEE DERVTSISKK 180 VKSKLQVKIL LCTGEEHERR PYIWY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089901.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089901.1 | 1e-150 | putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A2G9IAD4 | 6e-29 | A0A2G9IAD4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02605.1.p | 9e-26 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 5e-16 | B3 family protein |