PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089857.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 286aa    MW: 30411.2 Da    PI: 6.5074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-19107156255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +grWv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_011089857.1 107 TYRGVRKRN-WGRWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 156
                     69****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-14107156IPR001471AP2/ERF domain
SMARTSM003806.1E-34107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.762107164IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22107165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-32107165IPR001471AP2/ERF domain
CDDcd000187.00E-31108164No hitNo description
PRINTSPR003673.0E-10108119IPR001471AP2/ERF domain
PRINTSPR003673.0E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEGTIIFESA AQHQLFSSSA AAAAVATSST TSSASSTSGG CVLPSASSTS SSSSDSSTNE  60
TQSVVKSKDC SKGQKITRKA QGEKSGNEDA ARQRNGGSAS ANDKHPTYRG VRKRNWGRWV  120
CEIREPRKKS RIWLGTYPTA EMAARAHDVA ALAIKGQSAY LNFPQLAQYL PRPTSTAPKD  180
IQAAAAKAAA ATFPEETSQC GAEPQLSESK LPSSQSSTNL TLDNMQESSN SASAAHHDDD  240
TFFDLPDLSL SSTDHSNGYC YYASSWQLAG ADVGFRLEDP FLWECN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1897165473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089857.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2G9GD181e-111A0A2G9GD18_9LAMI; Uncharacterized protein
STRINGPOPTR_0014s05500.19e-82(Populus trichocarpa)
STRINGMigut.B01558.1.p1e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.19e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]