PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 697aa MW: 77096.9 Da PI: 9.083 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.9e-08 | 598 | 647 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_011089486.1 598 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 647 679***********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 5.31E-7 | 400 | 487 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.134 | 404 | 474 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 16.007 | 593 | 652 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-8 | 597 | 650 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 598 | 648 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-16 | 599 | 680 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.10E-17 | 599 | 649 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MALQKRLDYG FNGYQVPPTP RAARSVRRRC VFKRKADDQQ MCAFDLLATV AGKLLLDGES 60 PASAHASCRK EQPAALEDSV GKEEKDENKP LEEKSCDQNC YERNFLFTEL VSEAPKPNFR 120 PDELVCTQND VISRPASGIT TSDCSEKVGP AEQLVNDDCK LRLGIFTPSV DVESSGFRVP 180 ANCGSEDESR KPIKMDSAST RNFSISNKAS LCSSGHSEAW DRKPSVLVSP VDSLKFPFCR 240 DNTPCGSFPG NQDNVKLVNR DDDENSSECN EPGTRNKAFK PQPRVGDRRF RKLLASKHCK 300 ITPNVKDDER YNADTERCDY LNRKNNIKRQ RSMRDYPFKK RKLYDCSSVS NSEEGVSSDG 360 ICTVPANGTN GGGLGPGPTL PGAIPNPTPA AGGNASFHTR NSQVKLKIKS FRVPELYIEI 420 PENATVGSLK RTVLEAVNAV LGGGLRVGVL LQGKKIRDDN KTLLQTGISQ DNKMDTLGFT 480 LEPSPTPAPI RLYPEDRRGQ LLCDSPQPLA RYPPTPSITQ NGGQQRNLDT PPDLPGTSFN 540 NFIESDHDSA PSPPGMSLQR TTSESKALVP VPSTKQDALA VVPLRKSKRS ESAQRRIRRP 600 FTVAEVEALV QAVEKLGTGR WRDVKLRAFD SAKHRTYVDL KDKWKTLVHT ARISPQQRRG 660 EPVPQELLDR VLTAHAYWSQ QQAKQQLKSQ PDTSLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-55 | 585 | 688 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 292 | DRRFRKL |
2 | 327 | 342 | KRQRSMRDYPFKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089486.1 | 0.0 | telomere repeat-binding protein 2 | ||||
Refseq | XP_011089488.1 | 0.0 | telomere repeat-binding protein 2 | ||||
Swissprot | Q6R0E3 | 1e-140 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A2G9I6C5 | 0.0 | A0A2G9I6C5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_06s0004g04940.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3076 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-111 | TRF-like 2 |