PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011088766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 215aa MW: 23621.9 Da PI: 7.282 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 178.9 | 2.3e-55 | 14 | 153 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s +++CqdCGnqak+dC+h RCRtCCksrgf+C+thvkstWvp+++rr rq+ +++ ++ + + + ++++ + s+ ++ + +++ + XP_011088766.1 14 SSSSRCQDCGNQAKRDCEHLRCRTCCKSRGFECQTHVKSTWVPVSRRRPRQHIMHQHHQIS--D----TVEDQH-----HGSNPKRFR-EQNPAL 96 56789*********************************************87766543222..2....222221.....122222222.222344 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P evs +avfrcvrvss+d+ +++aYqt+vsigGhvf GiLydqG+e+ XP_011088766.1 97 LGLEEGDFPGEVSFPAVFRCVRVSSMDNVVDQYAYQTSVSIGGHVFTGILYDQGPEA 153 5677788************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.1E-58 | 16 | 152 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.6E-26 | 19 | 60 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-24 | 104 | 151 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MRSEEIGGIN SSSSSSSRCQ DCGNQAKRDC EHLRCRTCCK SRGFECQTHV KSTWVPVSRR 60 RPRQHIMHQH HQISDTVEDQ HHGSNPKRFR EQNPALLGLE EGDFPGEVSF PAVFRCVRVS 120 SMDNVVDQYA YQTSVSIGGH VFTGILYDQG PEADGTGNYV TGGSSSSAGI GLFEQTHFVN 180 STTATATGTT SSPYPSPFCA FTATSSQFFH QYPKS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011088766.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088766.2 | 1e-107 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9XGX0 | 8e-52 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A4D9C4F9 | 1e-106 | A0A4D9C4F9_SALSN; Uncharacterized protein | ||||
STRING | XP_009602229.1 | 6e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66350.1 | 7e-53 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|