PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088745.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 275aa    MW: 32002.2 Da    PI: 9.5941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.6e-1784174199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l+lpk f++ h   + +++++tl des++++  k+     +++  l++GW++F  +++L+egD++vF+l+g  +   +v 
  XP_011088745.1  84 FVKPMIRSNVTGGFWLSLPKLFCKLHL--PSCDIKITLVDESNKEYYTKY--LPERRG--LSAGWRGFSISHNLEEGDILVFHLVGVCKM--KVY 170
                     89*********************8885..4699*****************..777777..9**********************9995444..777 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_011088745.1 171 IVRA 174
                     7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1878175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2379176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-2382173No hitNo description
SMARTSM010191.7E-1784175IPR003340B3 DNA binding domain
PROSITE profilePS5086311.87184175IPR003340B3 DNA binding domain
PfamPF023623.9E-1584174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MIVWLPMFLI RKRRKPFMIM KDFMEIKEMH TRKRDSHDTT GEARSCRRIR TTKNNLHFQV  60
EITSSVMERA EEIQANLATQ FPSFVKPMIR SNVTGGFWLS LPKLFCKLHL PSCDIKITLV  120
DESNKEYYTK YLPERRGLSA GWRGFSISHN LEEGDILVFH LVGVCKMKVY IVRANHFSAV  180
DAAVSLLHLQ ACADVVNHEH FKEGRTSPQV PEKLLRPPSQ EMLCSNFDKF EESFKSKPVS  240
NDSRNISKNI VCFRSLLNHF LLTVTFWELP YVIYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552067.10.0B3 domain-containing protein At5g42700-like isoform X2
TrEMBLA0A1J6IMH71e-61A0A1J6IMH7_NICAT; B3 domain-containing protein
TrEMBLM1CFC62e-61M1CFC6_SOLTU; Uncharacterized protein
TrEMBLM1CFC71e-61M1CFC7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663123e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-41B3 family protein