PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088744.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 330aa MW: 36435.8 Da PI: 9.3061

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.3	1.3e-15	46	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ +++ +r+klk+++We+v+k++ + ++++qCk+k+e+++kry+ + + s++p++ +l+ XP_011088744.1 46 EWSEGAVSSLLEAYEAKWTLRNRAKLKGQDWEDVAKHVsgraNGSKSAKTQTQCKNKIESMKKRYRSESAAGDP------SSWPLYPRLD 129 5***********************************99544455578***************98876664......4699998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.7E-20	44	129	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MERNDDQVLP KHQETSSSLL SQNPKLEIPS ASDFPRNHHD RLKRDEWSEG AVSSLLEAYE 60 AKWTLRNRAK LKGQDWEDVA KHVSGRANGS KSAKTQTQCK NKIESMKKRY RSESAAGDPS 120 SWPLYPRLDL LLRGNGTGPA AASASAANPP PPPVVTVELP SSAPPPPAPA VLEQGSVGQD 180 SHGTSGGDRL VKEDGCNHAG AKLSNVQESE KNPIDDTDST TPAIYAEKEN PSRKPCLKAE 240 RKGKAMKKRK TREEYWEIGD SIRWLAEVVA RSEQARMETM REIERMRAEA EAKRGEMDLK 300 RTEIIASTQL EIAKLFARGS VDSSFKIGRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088744.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ031838	2e-56	KJ031838.1 Sesamum indicum clone TilSSR_3039 microsatellite sesame_3039 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088744.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A2G9G8H7	1e-133	A0A2G9G8H7_9LAMI; Transcription factor GT-2
STRING	XP_010067722.1	1e-113	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	5e-77	sequence-specific DNA binding transcription factors