PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088609.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 287aa MW: 31201.9 Da PI: 6.6061

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.4	1.7e-09	107	153	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+++ Le++v L a N++L k+l+ XP_011088609.1 107 KGKKRPLGNREAVRKYREKKKARTASLEDEVIRLRALNQQLMKRLQG 153 56788899***********************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.5E-14	100	171	No hit	No description
SMART	SM00338	1.0E-10	103	170	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	6.1E-15	105	160	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	105	152	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	108	152	No hit	No description
CDD	cd14686	6.72E-12	109	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDDGELDFPS DQMLSCLDMT NAQSSCSFDI DEFLGRTQAC NDALGRTEAY TDVLGRTQAC 60 THAHACNPSG PDKSHTHTCI HVHTQIMPSP SEPQAPSDDT AESVEKKGKK RPLGNREAVR 120 KYREKKKART ASLEDEVIRL RALNQQLMKR LQGQALLEAE IARLKCLLVD IRGRIEGEIG 180 AFPYQKPTKS GDVYQNIANP NLPGTYVMNP CNMQRNDQLY CLHPGSETAL NGQGLGDCGF 240 DNLQCLGNQS SDQKELPDCG LGNANVVSGG NTSSSSKRKG GRAAMAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088609.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088608.1	0.0	basic leucine zipper 23 isoform X2
Swissprot	Q8GTS2	3e-88	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2G9HNQ3	0.0	A0A2G9HNQ3_9LAMI; Uncharacterized protein
STRING	Migut.B00082.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-87	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]