PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088065.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 268aa    MW: 28224.5 Da    PI: 7.765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_011088065.1 130 YKCSVCNKVFPSYQALGGHKASH 152
                     9***********99999998887 PP
2zf-C2H214.40.00011187209123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+ksF++   L  H r+H
  XP_011088065.1 187 HECSICHKSFPTGQALGGHKRRH 209
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-9129152No hitNo description
PfamPF139121.1E-14130154IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427130157IPR007087Zinc finger, C2H2
SMARTSM003550.0027130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-9182209No hitNo description
PfamPF139124.6E-13187211IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473187209IPR007087Zinc finger, C2H2
SMARTSM003550.039187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALEALNSSA PPPAPLNLSR RFDDVEPHIV DSWRKSKRSK RQRGCGESEE EYLAVCLVML  60
ARSGGGRYSM TASPTPTTPA SEEGDKSSTI AITATTPGAV ALPNCVDIKK DQESSLATPP  120
PPPTSTNNSY KCSVCNKVFP SYQALGGHKA SHRAKPPAAT ADDGNPSTVL TTSSTYTSVT  180
NPSGKLHECS ICHKSFPTGQ ALGGHKRRHY EGVIGSAAAK SRTTSSYGGG GSDQMTVTIS  240
RNIDLNLPPS PGLHCDEEVE SALPPLFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088065.10.0zinc finger protein AZF2-like
TrEMBLA0A4D9BGD62e-70A0A4D9BGD6_SALSN; Uncharacterized protein
STRINGMigut.B00436.1.p8e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1500529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-30zinc-finger protein 2