PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087836.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 321aa    MW: 34211 Da    PI: 7.9622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.7e-11140166127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     yk +lCrf+  tG C++G+ C+FaHg+
  XP_011087836.1 140 YKNRLCRFWENTGACQFGSGCQFAHGR 166
                     899**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-15137171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-9138170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779139167IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8140166IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4141166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MENQRESKAP KLKSLDGAVS HNVLNLAGGH RYSPMFDPYP SDSSSSPSAL VTYLEAADPS  60
STFETPSVFI TPVKVEEDVI VMDGIPVPKS NKGGGEGRMR LATSSNSVIG GLVSGRSHST  120
SSPSTGGGGR GSGTEQSRYY KNRLCRFWEN TGACQFGSGC QFAHGREELR LPRSSGRTKL  180
ETFKLNNNLE GSTPSSYGTK YPPISQVKTP PPPLPPAAAE PFSFPSPPTG MDFPTSPSQV  240
KQLSGSTSSS SATANTTPPP PRSDWTPGDD GIDVSLPLGS TEKKNPSKQD VDAHIEKVLY  300
GTKSRKRLPV FVEICPDEFV D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0554412e-56KJ055441.1 Sesamum indicum clone TilSSR_26642 microsatellite Sesame_26642 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087836.10.0mRNA decay activator protein ZFP36-like isoform X2
TrEMBLA0A4D8ZTF32e-80A0A4D8ZTF3_SALSN; Uncharacterized protein
STRINGMigut.B00638.1.p1e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-07C3H family protein