PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087834.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 197aa MW: 22566 Da PI: 4.6801

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.7	6.6e-34	8	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ +e ++wyf+s+r k +r+ sgyW++ g +++++s+ XP_011087834.1 8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWDLHGKAMGEGNKWYFYSRRTK--------SRVSGSGYWQSIGVEEPIYSS 93 79***********************999.99**********977778899**9865........68999***********9 PP NAM 96 ..kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++++glkk +fy g + ++++kt+W+m+eyrl XP_011087834.1 94 tnGHNVIGLKKYSAFYIGepSGSQAVKTNWIMQEYRL 130 877788******6633667888*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-46	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	44.263	8	167	IPR003441	NAC domain
Pfam	PF02365	1.8E-21	9	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGENNFNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLDLYPYDP WDLHGKAMGE 60 GNKWYFYSRR TKSRVSGSGY WQSIGVEEPI YSSTNGHNVI GLKKYSAFYI GEPSGSQAVK 120 TNWIMQEYRL SSDSTSSTRS STSSRRSRNS KNIIDYSKWV ICRVYEYNDE DDDGAELSCL 180 DEVFLSLDDL DEISLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-36	4	166	16	167	NAC domain-containing protein 19
3swm_B	4e-36	4	166	16	167	NAC domain-containing protein 19
3swm_C	4e-36	4	166	16	167	NAC domain-containing protein 19
3swm_D	4e-36	4	166	16	167	NAC domain-containing protein 19
3swp_A	4e-36	4	166	16	167	NAC domain-containing protein 19
3swp_B	4e-36	4	166	16	167	NAC domain-containing protein 19
3swp_C	4e-36	4	166	16	167	NAC domain-containing protein 19
3swp_D	4e-36	4	166	16	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087834.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087834.1	1e-146	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A068TMB6	2e-95	A0A068TMB6_COFCA; Uncharacterized protein
STRING	XP_009762857.1	5e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-73	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]