PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087706.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 504aa MW: 53709.2 Da PI: 7.4828

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	6.3e-39	123	234	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ XP_011087706.1 123 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSSLSAPpsksaphs 217 6799****************************************************************999866666666664444344445555 PP TCP 89 ................k 89 + XP_011087706.1 218 fhsalglahhpyeenfS 234 55555555555444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.8E-41	127	284	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	128	182	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MELTDSSSHT NKQQSSSTTS SSSSTIPATT TSSSSQPYHL TPPHLLHRLH GRSPPFISPL 60 HTPSLPPPTA SSPPSASQQL VDASLAIATR SETLIDHPTT SKRPPQQVQA APQGEQQQQP 120 QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAII 180 AATGTGTIPA NFSTLNISLR SSGSSLSAPP SKSAPHSFHS ALGLAHHPYE ENFSHMLGFH 240 HHQQQQQPPP HLLQAAQITD TLAAGGSSGG QEETENYLRK RYREDLFKEE GANNSQAEGP 300 SSSPSNKQFK SQNSLQNLQK PQDSAGQSPG SLMRHANMMP AAAMWAVTPA PTSGASGSTF 360 WMLPMTAAAG GGNSAQTLAA ASSTGPSEAA QMWPFATAHG VGNTLQAPLH FMPRFNYPGN 420 LEFQGGRANP LQLGSILMQQ QQQPQQPSQH LGLGVNPAES NLGMLAAINA YSRTGLSMNS 480 ENVEQQHQPQ ATDSDDDGGQ NSSQ

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MELTDSSSHT NKQQSSSTTS SSSSTIPATT TSSSSQPYHL TPPHLLHRLH GRSPPFISPL  60
HTPSLPPPTA SSPPSASQQL VDASLAIATR SETLIDHPTT SKRPPQQVQA APQGEQQQQP  120
QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  180
AATGTGTIPA NFSTLNISLR SSGSSLSAPP SKSAPHSFHS ALGLAHHPYE ENFSHMLGFH  240
HHQQQQQPPP HLLQAAQITD TLAAGGSSGG QEETENYLRK RYREDLFKEE GANNSQAEGP  300
SSSPSNKQFK SQNSLQNLQK PQDSAGQSPG SLMRHANMMP AAAMWAVTPA PTSGASGSTF  360
WMLPMTAAAG GGNSAQTLAA ASSTGPSEAA QMWPFATAHG VGNTLQAPLH FMPRFNYPGN  420
LEFQGGRANP LQLGSILMQQ QQQPQQPSQH LGLGVNPAES NLGMLAAINA YSRTGLSMNS  480
ENVEQQHQPQ ATDSDDDGGQ NSSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087706.1	0.0	transcription factor TCP8
TrEMBL	A0A2G9HCW8	0.0	A0A2G9HCW8_9LAMI; Uncharacterized protein
STRING	Migut.B00803.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-54	TCP family protein