PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 732aa MW: 79228.6 Da PI: 6.5061 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 310 | 330 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_011087691.1 310 PCPDFRK-GACRRGDMCEYAHG 330 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.17E-17 | 34 | 164 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.22E-14 | 37 | 163 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 5.7E-18 | 37 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.4E-11 | 81 | 154 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.857 | 85 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.15 | 85 | 115 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.1E-5 | 86 | 101 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.9E-5 | 120 | 152 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.342 | 120 | 155 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.1E-5 | 139 | 153 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 305 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-5 | 310 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 310 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 338 | 368 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 64 | 340 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MCSGPERSNS NSSTTQGAAD KKTNNMKDLN NLSVETEDSF SSLLEYAANN DIEAFKRSIE 60 LDLSAVDEAG LWYVRKKGLK QITQEERTPL MLAATYGSID VLKLIVALPE VDLNRSCGKD 120 KWTALHCAAS GGSMNAFEVV KLLLSAGADP NIEDVTGRRP VDVLVIPPKL PGAKAALEDL 180 LINNSSDGSV GACNLRVSLS SSNASSPVLS SSPESGSPCS PSDSASSPTA PKFSDTAVNS 240 VSEKKQYPVD PSLPDIRNSI YSTDEFRMFS FKVRPCSRAY SHDWTECPFV HPGENARRRD 300 PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT SCARQVCFFA 360 HTQDELRPLY VSTGSGVPSP RSAASAASFM DMAAALSLLP GSPTSQSVMS PSAFNQTMSP 420 SANGISHSPA AWPQPNVPTL HLPGSNLQSS RLRSSLSARD IPPEDLNVLR DYDAQQLVMN 480 DLACFSQPRP SSAMLNCAGR SKTTLTPSNL EELFSAEIAS SPRYSDQAAA FGVFSPSHKS 540 AVLNQFQQQQ NILPPINTNV FSPRNVEHPL LQASLGVSSP RMSPRSMEPG SPMSARLSAF 600 AQRERQQQHM RSLSSRDLGS NRVPVVGSPT TTWSKWGSPN GKVDWSVSGE DQGHLKRSSS 660 FELKNDGEEP DLSWVQSLVK ESPPEMTDKP AAPVSGAAPS GECLKSNSQT DSIDHSVLGA 720 WLEQMQLDQL VA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087691.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087691.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2G9IBP4 | 0.0 | A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | XP_009799603.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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