PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087634.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 680aa MW: 78168.1 Da PI: 8.2185

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_011087634.1 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKSTelgVPEWRVTGFANHHNHELL 155 6************9998877356667999***********999******************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-19	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSEDAGQMML VYDDPSDQRS MSMDDTSSAE ESPDGTRLSL ETTNDAIPYI GQRFATHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSNE NKPQRNRKSS 120 RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF 180 AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KIDPEDESID LLRMCRNIKD 240 KDPNFRFEFT LDSNGRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN 300 NYGMPCFFGC VLLREENLRS FSWALKAFSG FMNGKAPQTI LTDQNMCLKE AIGMEMPTTK 360 HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLETI EDFELGWRDM VHSFGLHTNR 420 HIASLYALRT LWALPYLRSH FFAGMTTPGQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQAGEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVMAA HYASYQMEDG 540 FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPL 600 RWRRISTPSN RHLHTPRNDH MERIQLLQSM VSTLVTESAK SKERLDLATE QISVLLSRIR 660 EQPVPALGLR EMSSTHRNLA

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSEDAGQMML VYDDPSDQRS MSMDDTSSAE ESPDGTRLSL ETTNDAIPYI GQRFATHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSNE NKPQRNRKSS  120
RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KIDPEDESID LLRMCRNIKD  240
KDPNFRFEFT LDSNGRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREENLRS FSWALKAFSG FMNGKAPQTI LTDQNMCLKE AIGMEMPTTK  360
HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLETI EDFELGWRDM VHSFGLHTNR  420
HIASLYALRT LWALPYLRSH FFAGMTTPGQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVMAA HYASYQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPL  600
RWRRISTPSN RHLHTPRNDH MERIQLLQSM VSTLVTESAK SKERLDLATE QISVLLSRIR  660
EQPVPALGLR EMSSTHRNLA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087634.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087634.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2G9GVP8	0.0	A0A2G9GVP8_9LAMI; Uncharacterized protein
STRING	POPTR_0004s23620.1	0.0	(Populus trichocarpa)
STRING	cassava4.1_002947m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]