PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087187.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 353aa    MW: 38809.7 Da    PI: 6.9452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10231277555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++YI+sLq
  XP_011087187.1 231 HSLAERARREKISERMKTLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 277
                     999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-9224281No hitNo description
SuperFamilySSF474592.49E-17224294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.91226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-17227290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-8231277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-11232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MKRIIDSSFL PLHHSSIFLL CLTSQSLSLS DYILNLPVIL TLYIDTQCTH SLLCLYVSSR  60
KREKSRMDQL LVNEASFTVA INQSSYSLAE LLSSGMGGGG GGLGLRMGSL GDDGSGVGEV  120
GDVSLEQSTV TYQSVSRGGN GGGKRRRGVV NFIEDDSSKL VSTSSDNHDL NESNGKRMKA  180
SGSRDEDRGS KTEAETNPLN SIKSIEEKSK PEPPKYYIHV RARRGQATDR HSLAERARRE  240
KISERMKTLQ DLVPGCNKVI GKALVLDEII NYIQSLQHQV EFLLMKLVAV NPRLDPAIEG  300
FPIKDVAARS FDANGTMYKS QAPEECGQGT QTEWPPLQVG SGFENEKHDW ESR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0374709e-56KJ037470.1 Sesamum indicum clone TilSSR_8671 microsatellite sesame_8671 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087187.10.0transcription factor bHLH79
SwissprotQ84T085e-63BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0H3YBS31e-111A0A0H3YBS3_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_006476705.11e-97(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-60BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]