PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 27866.2 Da PI: 8.3657 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.3 | 4e-36 | 49 | 133 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+ +d++ti+WLlqqa+p+i+++tgt++++as++ a++ s+s++ +s XP_011087116.1 49 APKRRSNKDRHKKVDGRGRRIRIPALCAARIFQLTRELGHRTDGETIQWLLQQAEPSIIAATGTGTIPASAVIAAEASVSGQGDS 133 789******************************************************************9996666666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-29 | 54 | 187 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.591 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MPHFSGLLME HKPSKHQQQL QISQGHVPHP DMALNKPQQL DDNKKRQLAP KRRSNKDRHK 60 KVDGRGRRIR IPALCAARIF QLTRELGHRT DGETIQWLLQ QAEPSIIAAT GTGTIPASAV 120 IAAEASVSGQ GDSVTCGLYS RLIGEDVLGR SMGIWPCLNG FGSGILQNPS DLGSNQTGNR 180 VGKIGFQGFE FPGSGSFGQH GPGLELGLSQ EGQVGGMNLE ALSQFYQQMR QQNGECSGLS 240 SHQEQNHGEE NSQGSRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087116.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087116.2 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-56 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2G9GCB7 | 1e-106 | A0A2G9GCB7_9LAMI; Uncharacterized protein | ||||
STRING | EOX99738 | 6e-74 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-57 | TCP family protein |