PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011086971.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 474aa MW: 52780.4 Da PI: 5.8487

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.5e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_011086971.1 55 RERWTEEEHQKFLEALKLYGRA-WRHIEEYVG-TKTAIQIRSHAQKF 99 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.11E-16	49	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.7	50	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	9.4E-17	53	102	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-13	55	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-8	55	95	IPR009057	Homeodomain-like
CDD	cd00167	9.92E-10	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MVAEAKEQVV ATSEDASFMV NSQLESVAGQ SKSLRSNGSS YTLKVRKPYT ITKQRERWTE 60 EEHQKFLEAL KLYGRAWRHI EEYVGTKTAI QIRSHAQKFF AKVTRDSSMD AEGSLDPIQI 120 PPPRPKKKPL HPYPRKFVDP VNREITVPNR LEISHSPDAS VPEKDNLSPT SVLSVVGSDT 180 LESTVAEMHE SCLSPASCSI DAPSTCSLLP ERDDEYITSE ISANEENGFR LSMKTSSNLV 240 PDKNSPMKLK LFPQEAECAI DSPQAEEPYT RIKLFGKTVM VRDASKQSLE VVENSQSLPP 300 DIIDKKLDNN ADELVKDRAL ISTSQYLEDT VECDSKSVIP SSLPQHPLNN IHCHMMNVFG 360 LPWWMWHQGV VYPSASSCQE VASQNAECSL IGKGLESEQL QLNGSLNGPK APISEANTEN 420 RNNEASEGKH LFDTGKKEPA KGFVAYKRCL AERDGRSSMS LLQEREGQRA RVCS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MVAEAKEQVV ATSEDASFMV NSQLESVAGQ SKSLRSNGSS YTLKVRKPYT ITKQRERWTE  60
EEHQKFLEAL KLYGRAWRHI EEYVGTKTAI QIRSHAQKFF AKVTRDSSMD AEGSLDPIQI  120
PPPRPKKKPL HPYPRKFVDP VNREITVPNR LEISHSPDAS VPEKDNLSPT SVLSVVGSDT  180
LESTVAEMHE SCLSPASCSI DAPSTCSLLP ERDDEYITSE ISANEENGFR LSMKTSSNLV  240
PDKNSPMKLK LFPQEAECAI DSPQAEEPYT RIKLFGKTVM VRDASKQSLE VVENSQSLPP  300
DIIDKKLDNN ADELVKDRAL ISTSQYLEDT VECDSKSVIP SSLPQHPLNN IHCHMMNVFG  360
LPWWMWHQGV VYPSASSCQE VASQNAECSL IGKGLESEQL QLNGSLNGPK APISEANTEN  420
RNNEASEGKH LFDTGKKEPA KGFVAYKRCL AERDGRSSMS LLQEREGQRA RVCS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086971.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086968.1	0.0	protein REVEILLE 2 isoform X1
TrEMBL	A0A2G9I4Z5	1e-114	A0A2G9I4Z5_9LAMI; Transcription factor, Myb superfamily

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-42	MYB_related family protein