PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011086969.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 456aa MW: 50886.3 Da PI: 6.3029

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	37	81	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_011086969.1 37 RERWTEEEHQKFLEALKLYGRA-WRHIEEYVG-TKTAIQIRSHAQKF 81 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-16	31	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.7	32	86	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.9E-17	35	84	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	36	84	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-13	37	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	37	77	IPR009057	Homeodomain-like
CDD	cd00167	1.00E-9	39	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MVNSQLESVA GQSKSLRSNG SSYTLKVRKP YTITKQRERW TEEEHQKFLE ALKLYGRAWR 60 HIEEYVGTKT AIQIRSHAQK FFAKVTRDSS MDAEGSLDPI QIPPPRPKKK PLHPYPRKFV 120 DPVNREITVP NRLEISHSPD ASVPEKDNLS PTSVLSVVGS DTLESTVAEM HESCLSPASC 180 SIDAPSTCSL LPERDDEYIT SEISANEENG FRLSMKTSSN LVPDKNSPMK LKLFPQEAEC 240 AIDSPQAEEP YTRIKLFGKT VMVRDASKQS LEVVENSQSL PPDIIDKKLD NNADELVKDR 300 ALISTSQYLE DTVECDSKSV IPSSLPQHPL NNIHCHMMNV FGLPWWMWHQ GVVYPSASSC 360 QEVASQNAEC SLIGKGLESE QLQLNGSLNG PKAPISEANT ENRNNEASEG KHLFDTGKKE 420 PAKGFVAYKR CLAERDGRSS MSLLQEREGQ RARVCS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MVNSQLESVA GQSKSLRSNG SSYTLKVRKP YTITKQRERW TEEEHQKFLE ALKLYGRAWR  60
HIEEYVGTKT AIQIRSHAQK FFAKVTRDSS MDAEGSLDPI QIPPPRPKKK PLHPYPRKFV  120
DPVNREITVP NRLEISHSPD ASVPEKDNLS PTSVLSVVGS DTLESTVAEM HESCLSPASC  180
SIDAPSTCSL LPERDDEYIT SEISANEENG FRLSMKTSSN LVPDKNSPMK LKLFPQEAEC  240
AIDSPQAEEP YTRIKLFGKT VMVRDASKQS LEVVENSQSL PPDIIDKKLD NNADELVKDR  300
ALISTSQYLE DTVECDSKSV IPSSLPQHPL NNIHCHMMNV FGLPWWMWHQ GVVYPSASSC  360
QEVASQNAEC SLIGKGLESE QLQLNGSLNG PKAPISEANT ENRNNEASEG KHLFDTGKKE  420
PAKGFVAYKR CLAERDGRSS MSLLQEREGQ RARVCS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086969.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086968.1	0.0	protein REVEILLE 2 isoform X1
TrEMBL	A0A2G9I4Z5	1e-110	A0A2G9I4Z5_9LAMI; Transcription factor, Myb superfamily

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-42	MYB_related family protein