PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011086968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 474aa MW: 52780.4 Da PI: 5.8487 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_011086968.1 55 RERWTEEEHQKFLEALKLYGRA-WRHIEEYVG-TKTAIQIRSHAQKF 99 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.11E-16 | 49 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.7 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.4E-17 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-13 | 55 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 55 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.92E-10 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MVAEAKEQVV ATSEDASFMV NSQLESVAGQ SKSLRSNGSS YTLKVRKPYT ITKQRERWTE 60 EEHQKFLEAL KLYGRAWRHI EEYVGTKTAI QIRSHAQKFF AKVTRDSSMD AEGSLDPIQI 120 PPPRPKKKPL HPYPRKFVDP VNREITVPNR LEISHSPDAS VPEKDNLSPT SVLSVVGSDT 180 LESTVAEMHE SCLSPASCSI DAPSTCSLLP ERDDEYITSE ISANEENGFR LSMKTSSNLV 240 PDKNSPMKLK LFPQEAECAI DSPQAEEPYT RIKLFGKTVM VRDASKQSLE VVENSQSLPP 300 DIIDKKLDNN ADELVKDRAL ISTSQYLEDT VECDSKSVIP SSLPQHPLNN IHCHMMNVFG 360 LPWWMWHQGV VYPSASSCQE VASQNAECSL IGKGLESEQL QLNGSLNGPK APISEANTEN 420 RNNEASEGKH LFDTGKKEPA KGFVAYKRCL AERDGRSSMS LLQEREGQRA RVCS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011086968.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086968.1 | 0.0 | protein REVEILLE 2 isoform X1 | ||||
TrEMBL | A0A2G9I4Z5 | 1e-114 | A0A2G9I4Z5_9LAMI; Transcription factor, Myb superfamily |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-42 | MYB_related family protein |