PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086781.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 135aa    MW: 15497 Da    PI: 10.4893
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC44.33.8e-1412961497
           NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    +++++ e+P  r+k+i+k d+d++++ +ea  l++ + elfi  l+ +s   a e+k+rt++   +  a +r   + dfl+d  p
  XP_011086781.1 12 AEIHKLEIPTRRVKNIMKLDKDINKVNSEALFLVASSTELFIQFLAEKSAHVALEKKKRTVRVEHMRVAAKRHRpTGDFLLDSLP 96
                    56778899*********************************************************998888764388*****988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-161599IPR009072Histone-fold
PfamPF008088.2E-171880IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.0E-182096IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAQQEEDPNP IAEIHKLEIP TRRVKNIMKL DKDINKVNSE ALFLVASSTE LFIQFLAEKS  60
AHVALEKKKR TVRVEHMRVA AKRHRPTGDF LLDSLPMPPQ PAEQNPPKDQ AKTRLDKKPV  120
PFATRSIEAF FQKFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086780.27e-93nuclear transcription factor Y subunit gamma isoform X1
RefseqXP_011086781.27e-93nuclear transcription factor Y subunit gamma isoform X2
TrEMBLA0A2G9GVN91e-72A0A2G9GVN9_9LAMI; Uncharacterized protein
STRINGMigut.K00728.1.p1e-66(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-35nuclear factor Y, subunit C13